Blogiverse - Talking About Everything

Just a blog of some guy. Actually, it's just a place for me to collect info, and is here more for me than you. I don't really have a single thing that I talk about, more like everything in the Blogosphere. Maybe it will be interesting, maybe you'll be bored to death. Hey, it's my web page, so I can do with it as I please. I just hope that you get some information or enlightenment out of it when you come to visit. So please visit often! Oh, and scroll down to the bottom for my big red A.

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Name: Larian LeQuella
Location: 3rd Rock from the Sun, New Hampshire, United States

This is MY blog, where I write about whatever I feel like. Actually, it's more of a collection of information that I like to have access to. If you want to find out more about me, you can go back to my homepage, or visit my Facebook, Twitter, or even MySpace pages.

02 February 2010

Facts, not Fantasy Blog

I just wanted to pop off a quick not about the Facts, not Fantasy series of blogs. There has been a lot of news to report on that front, especially in the field of the so called doctor that started this whole anti-vax pro-disease fiasco. Not only has he been discredited by ethics groups, but the whole article that started this has been retracted. In addition to this bit of good news, the web page itself has gone through some updates, and now the page detailing many of the lies and distortions told by the pro-disease nutters has received a revamp. Of course, with this latest bit of news, I suppose a small update is in order for that as well.

Another topic that I am handling there is the subject of evolution. In particular, countering the outright lies and distortions that creationists will use. It's not bad enough that "intelligent design" has such a strong grip by sounding pseudo-scientific, but outright young earth creationists are out there in droves. It's not bad enough that they are denying hundreds of years worth of reality based science, but they are trying to force that view on everyone else around them, and invent the most atrocious lies and distortions to try to prop up their lies (I suppose lying is okay, as long as you do it in the name of some imaginary sky fairy). As such, I have dedicated several pages to dismantling their poor logic, and even worse understanding of the world around them. Three of these pages were written by specific scientists and other well educated people, and the thing that I found particularly telling about them is that they are set up to debunk pretty much all the same arguments. it's as if these liars haven't come up with anything substantially new since they realized their fairy tales were in danger. If you want to read up on it though, there is Creationists, Read This; Creationist nonsense (from Scientific American); and 25 Arguments Refuted (from Skeptic Magazine as well as Michael Shermer's book Why People Believe Weird Things).

Anyway, trying to drum up traffic for that site as well.

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10 January 2010

Casey Luskin Wrong on Tiktaalik

Just found this entry over at Skeptico. Normally I would consider posting it over at Facts not Fantasy, but I think it's probably a bit too inflammatory for that page, so I am putting it here. As someone else said, this is really a story about "For every quote used by a creationist, there is an equal and opposite rest of the quote." I just find it amusing that such godly people would be such lying sacks of shit, and display such craven dishonesty! I suppose that lying for jebus is okay?

Casey Luskin Wrong on Tiktaalik

Casey Luskin over at the Disco-Tute’s blog is getting all excited about the recent discovery of fossilized tetrapod (four footed vertebrate) footprints in Poland, dated 395 million years ago. What? The Disco-Tute is excited about new scientific discoveries? Well, yes, but only because they think it disproves evolution, or something. Luskin’s post is entitled Tiktaalik Blown "Out of the Water" by Earlier Tetrapod Fossil Footprints, which should give you an idea. Briefly, the transitional (between fish and tetrapod) fossil Tiktaalik was found in rocks 375 million years old, but these new tetrapod fossils are 395 million years old, so this newly discovered tetrapod wasn’t a descendant of Tiktaalik. Luskin claims this means Tiktaalik isn’t a transitional form, even though it clearly has features of both fish and tetrapods (more on that below).

Here’s Luskin:

The fossil tetrapod footprints indicate Tiktaalik came over 10 million years after the existence of the first known true tetrapod. Tiktaalik, of course, is not a tetrapod but a fish, and these footprints make it very difficult to presently argue that Tiktaalik is a transitional link between fish and tetrapods. It’s not a “snapshot of fish evolving into land animals,” because if this transition ever took place it seems to have occurred millions of years before Tiktaalik. [My bold.]

Of course, Luskin’s reasoning is wrong – if Tiktaalik is an intermediate between fish and tetrapods, then the discovery that this evolution also occurred earlier doesn’t suddenly magically mean that Tiktaalik isn’t an intermediate between fish and tetrapods anymore. The evidence that Tiktaalik is an intermediate is still evidence that Tiktaalik is an intermediate. Luskin doesn’t understand what an “intermediate” is – he thinks it has to be something on a direct line from (in this case) fish to existing land animals; it’s actually just a fossil that shows evolutionary change within lineages. (It has features of both a fish and a tetrapod, so it shows evolution happening.) Luskin thinks evolutionary theory says this happened only once. But evolutionary theory doesn’t say that. Transitional forms don’t have to be direct descendants of living species, they just have to be transitional between species (“cousins” of our ancestors, if you like) – that is, they just need to demonstrate evolution occurring.

PZ has a good post up, Casey Luskin embarrasses himself again, where he explains that Tiktaalik's status as a transitional form does not depend on us slotting it in a specific chronological time period as a link between two stages in the evolution of a lineage.

Why ID Is Useless

An interesting thing about Tiktaalik, is how Neil Shubin (its discover) managed to find it using a prediction of evolutionary theory. In his post, Luskin quotes Shubin. I’ll repost what Luskin quoted, but I’ll add a piece that he missed, from Zimmer and Shubin on Tiktaalik:

What evolution enables us to do is to make specific predictions about what we should find in the fossil record. The prediction in this case is clear-cut. That is, if we go to rocks of the right age, and the rocks of the right type, we should find transitions between two great forms of life, between fish and amphibian.

[…]

What we see when we look at the fossil record, at rocks of just the right age, is a creature like Tiktaalik. Just like a fish, it has scales on its back, and fins. You can see the fin webbing here. Yet when we look at the head, you see something very different. You see a very amphibian-like thing, with a flat head, with eyes on top. It gets even better when we take the fin apart. When we look inside the fin, as in this cast here, what you’ll see is bones that compare to our shoulder, elbow, even parts of the wrist—bone for bone. So you have a fish, at just the right time in the history of life, that has characteristics of amphibians and primitive fish. It’s a mix.

[My bold to indicate the bit that Luskin didn’t quote.]

Tiktaalik is undoubtedly transitional. With gills, scales and fins it is a fish, but its fins, instead of having the many tiny bones normally found in fish, had fewer but sturdier bones in its limbs – bones similar in number and position to those of every land creature that came later. Also, it had a flat head with eyes on the top like a modern amphibian, and it had a neck (which fish don’t have). It also had spiracles (breathing holes) on the top of its head, which suggests it had primitive lungs, and it had stronger ribs that allowed it to pump air into these lungs. Normal fish don’t need these because they breathe through their gills.

Luskin misses the point of all this with his “Tiktaalik, of course, is not a tetrapod but a fish” comment. Typical creationist – scientist finds a transitional form (fish to tetrapod) and creationist insists it’s not transitional because it’s still either a fish or a tetrapod. (Fish, in this case.) Nothing would satisfy Luskin – regardless of what new fossils are found, according to Luskin they’ll either be a fish or a tetrapod but never a transitional.

Also, it is beyond question that Shubin used evolutionary theory to predict where he would find Tiktaalik. He reasoned that if there were lobe finned fish but no terrestrial vertebrates 390 million years ago, and terrestrial vertebrates 360 million years ago, evolutionary theory would predict that you would find fossils of the transitional form in rocks around 375 million old (ie in between the two). And you would find them in a freshwater area, since both lobe finned fish and early amphibians lived in freshwater. So that’s where he looked. And guess what? That’s exactly where he found it. So evolutionary theory predicted where the fossil would be found. Again, this all flies right over Luskin’s head:

The New York Times presaged Shubin's argument, first reporting on Tiktaalik that "the scientists concluded that Tiktaalik was an intermediate between the fishes Eusthenopteron and Panderichthys, which lived 385 million years ago, and early tetrapods. The known early tetrapods are Acanthostega and Ichthyostega, about 365 million years ago." But would neo-Darwinism have predicted true tetrapods from 397 million years ago? Definitely not

No, but then neither would Intelligent Design (ID) have predicted this. The same way that ID didn’t predict Tiktaalik. These new fossils were discovered by real scientist doing real science, not by creationists using “Intelligent Design.” What this demonstrates is that science expands our knowledge while ID is completely vacuous and useless. ID didn’t predict anything (neither Tiktaalik nor these new fossils) since ID is nothing but a bunch of ignorant whining about evolution.

Where do we go from here? Well, clearly the creationists at the Disco-Tute will continue to miss the point entirely and claim that this discovery by real scientists somehow invalidates discoveries made by other real scientists. Meanwhile, actual real scientists will use this new information as a springboard to investigate and learn more. Philippe Janvier from the Museum National d'Histoire Naturelle in Paris (reviewer of the paper on the newly found fossil) told CNN:

"The divergence between the tetrapods and their closest fish relatives is much younger than previously thought and it obliges us to find actual evidence -- skeletons or complete fossils -- in much earlier strata that could enlighten us between this divergence."

Real scientists will now do actual research on these new fossils so we can learn more about our past. The difference between this and creationist poseurs such as Luskin, couldn’t be clearer.

Additional Reading

Jerry Coyne’s excellent book Why Evolution Is True has more on Tiktaalik and on transitional forms in general.

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21 September 2009

On the Theme of Being Consistently Wrong

Since today is supposedly the end of the world as we know it, here's another post. Actually, I am reposting an essay by Austin Cline, but wanted to add in a few of my own comments first. Basically this is about how often theitards challenge science in the court of law. Now, I guess if the basis and foundation of your belief is under threat from reality (i.e. science), then the court of law is as good a place as any to start. After all, unlike science, the court of law has a much more lax standard of evidence. Human actions and presedence not based in reality can be used to sway judge to the side of the plaintifs. All you need is a really charismatic attorney that can convince another human being of their point of view... as long as that point of view isn't full of shit I guess...

So, in the spirit of theists being so abhorrently and consistently wrong, I give you:

Evolution & Creationism Court Cases - History of Evolution Court Cases
Major Cases & Rulings on Evolution & Creationism in the Federal Courts


In addition to usually losing political fights, creation science supporters also lose in the courts as well. Regardless of what arguments they try to use, the courts inevitably find that teaching creationism is a violation of the separation of church and state because creationists are unable to avoid the fact that their ideology is fundamentally religious and, therefore, inappropriate to teach students in public schools. Only science is appropriate for science classes and that's evolution.

Supreme Court Decisions
The first case came in 1968: Epperson v. Arkansas was over an Arkansas law prohibiting both the teaching of evolution and the adoption of text books which included the concept of evolution. When a Little Rock biology teacher found that a text book adopted by the local school board included evolution, she was faced with a difficult dilemma: she could either use the book and violate state law or she could refuse to use the text and risk disciplinary action from the board itself. Her solution was to remove the problem by getting rid of the law.
When the case reached the Supreme Court, the justices found that the law was impermissible because it violates the Establishment Clause and prohibits the free exercise of religion. Its only purpose was to prevent the teaching of a scientific concept which conflicted with doctrines of fundamentalist Protestant Christianity. As Justice Abe Fortas wrote:
There is and can be no doubt that the First Amendment does not permit the State to require that teaching and learning must be tailored to the principles or prohibitions of any religious sect or dogma.

This decision prevented schools from banning evolution in public schools, so creationists sought another way to stop "godless" evolution: "scientific creationism." This was designed to challenge evolution in the science classes without appearing to be religious. Creationists worked for the passage of "balanced treatment" laws mandating the teaching of creation science whenever evolution was taught. Arkansas again took the lead with Act 590 in 1981 mandating "balanced treatment" between evolution and creation science
A number of people, including local clergy, sued under the argument that this law impermissibly caused the government to give special support and consideration to one type of religious doctrine. A federal judge found the law unconstitutional in 1981 and declared creationism to be religious in nature ( McLean v. Arkansas).
Creationists decided not to appeal, pinning their hopes on a Louisiana case they thought they had a better chance of winning. Louisiana had passed a "Creationism Act" preventing evolution from being taught unless biblical creationism accompanied it. Voting 7-2 in Edwards v. Aguillard, the Court invalidated the law as a violation of the Establishment Clause. Justice Brennan wrote:
...the Creationism Act is designed either to promote the theory of creation science which embodies a particular religious tenet by requiring that creation science be taught whenever evolution is taught or to prohibit the teaching of a scientific theory disfavored by certain religious sects by forbidding the teaching of evolution when creation science is not also taught. The Establishment Clause, however, "forbids alike the preference of a religious doctrine or the prohibition of theory which is deemed antagonistic to a particular dogma."Because the primary purpose of the Creationism Act is to advance a particular religious belief, the Act endorses religion in violation of the First Amendment.


Lower Court Decisions
The debates continue in the lower courts. In 1994 the Tangipahoa Parish school district passed a law requiring teachers to read aloud a disclaimer before teaching evolution. The 5th Circuit Court of Appeals found in Freiler v. Tangipahoa that the stated "critical thinking" reasons for the disclaimer were a sham. Even if a valid secular purpose for the disclaimer existed, though, the court also found that the actual effects of the disclaimer were religious because it encouraged students to read and meditate upon religion in general and the "Biblical version of Creation" in particular.
Another creationist tactic was tried by biology teacher John Peloza in 1994. He sued his school district for forcing him to teach the "religion" of "evolutionism." The Ninth Circuit Court of Appeals complete rejected all of Peloza's arguments in Peloza v. Capistrano. They found that his arguments were inconsistent - sometimes he objected to teaching evolutionary theory, sometimes he objected to teaching evolution as a fact — and held that evolution is in no way a religion and has nothing to do with the origins of the universe.
Webster v. New Lenox School District was decided in 1990 by the 7th Circuit Court of Appeals. Ray Webster had been instructed not to teach creation science in his social studies class but he filed suit and claimed that the New Lenox School District violated his first and Fourteenth Amendment rights by prohibiting him from teaching a nonevolutionary theory of creation in the classroom. The court rejected each of his allegations and established that school districts can forbid creationism as a form of religious advocacy.
Creation scientists have failed in their attempts to have evolution legally banned from the classroom or to have creationism taught alongside evolution, but politically active creationists have not given up — nor are they likely to.
Creationists are encouraged to run for local school boards to gain control over science standards, with long-term hopes of diluting and eliminating evolution through slow attrition. This need only happen in a few areas to be successful because some states command a larger share of the market for school text books than others. If the text book publishers cannot easily sell books with a strong emphasis on evolution to large markets like Texas, then they are unlikely to go to bother publishing two versions. It doesn't matter where creationists become successful because. in the long run, they may end up affecting everyone.

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17 August 2009

Scientific American: Origins

I just got an email about the Scientific American Magazine: Origins project. I think that it would be a good moment to spread the work about this since it seems to be a pretty good collecion of science in one place attempting to tackle those deep issues that the ignorant say only humans contemplate (behavioral studies have shown that other animals also contemplate these things, but they are smart enough not to make up religions yet). Anyway, here is the introduction for you:

A Greek statesman who lived in the sixth century B.C. put forward the first explanation, shorn of theological trappings, that captured the essence of all things living and inanimate. Thales of Miletus noticed that water could exist as a liquid, gas or solid and posited that it was the fundamental constituent of matter from which the earth’s denizens—men, goats, flowers, rocks, and whatnot—somehow sprang forth.

As with all natural philosophy (a pursuit now known as science), Thales’ observation immediately provoked an argument. Anaximander, a disciple of Thales (today what would be called a graduate student), asked how water could be the single basic element if rock, sand and other substances appeared to be devoid of moisture.

The bickering about beginnings and the nature of our existence has not ceased in ensuing millennia, although Thales’ aqueous cosmology persists only as a passing citation in histories of philosophy and science. A definitive answer to the identity of the most basic ingredient of matter—and how it could ultimately lead to a world populated by iPhones and reruns of American Idol—still eludes today’s natural philosophers.

In early April a colloquy of 70 leading scientists assembled at Arizona State University to launch an Origins Initiative to ponder such questions as whether infinitesimal, stringlike particles may be candidates as the latest substitute for Thales’ vision of a wet world. An urge to deduce beginnings energizes the entire scientific endeavor—and of course that extends into the realm of biology. Appropriately, this year’s 150th anniversary of the publication of Charles Darwin’s On the Origin of Species coincides with a significant advance toward the milestone of demonstrating how life sprang from inanimate matter. A British team of chemists showed that one of the basic building blocks of life could form spontaneously from a warm soup of organic chemicals.

The immediacy of these themes is why this single-topic issue of Scientific American is devoted to origins in physics, chemistry, biology and technology. In the following pages, a physicist grapples with the overarching question of how the universe began. A chemist addresses possible ways in which life first started, and a biologist takes on what has made the human mind different from that of any other animal’s. Then a historian of technology contemplates the first computer, perhaps the most extraordinary invention of the human mind. A final section provides brief chronicles of the inception of dozens of physical and biological phenomena, in addition to a series of remarkable human inventions.

Whether related to rainbows, antibiotics or paper money, beginnings—and the stories they generate—serve as an endless source of fascination about the world around us.

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15 July 2009

Facts Not Fantasy

Just a quick post today. I am off to see the new Harry Potter movie with my daughter, so I have to say that takes precedence over anything that I would care to write today! Anyway, I combed through some news today, and there seems to be a lot of interesting science news on the stuff that I blog on at Facts Not Fantasy. Tool using apes. Figuring out the origin of flowers. Shark sex. Vaccines for Valley Fever and Alzheimer's. Isolating and figuring out 27 more genes associated with autism. More understanding of childhood brain development even.

It was also a good day for space news. Yesterday Falcon X launched a satellite for Malaysia. The Space Shuttle also got up. Although, from reports I am hearing, there was quite a bit of tile damage with this launch. That is concerning. Will have to keep an eye out on the news for more on that. Okay, I'll check with scientists and engineers, the news isn't worth shit...

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19 June 2009

Quick Blog Again

Today I have a a couple of different entries for you. First of all, I just love this comic: http://www.viruscomix.com/page433.html. How horrible are such things!?

I also have a couple items about subjects that I have been blogging on a lot at the Facts, not Fantasy site, so I wanted to add them here.

Vaccines/Autism:
Somehow I missed this article in the Skeptic eNewsletter. It's a great rundown. Here is a brief excerpt:

During a question and answer session after a talk I recently gave, I was asked for my opinion about the vaccine/autism controversy. That was easy: my opinion is that there is no controversy. The evidence is in. The scientific community has reached a clear consensus that vaccines don’t cause autism. There is no controversy.

There is, however, a manufactroversy — a manufactured controversy — created by junk science, dishonest researchers, professional misconduct, outright fraud, lies, misrepresentations, irresponsible reporting, unfortunate media publicity, poor judgment, celebrities who think they are wiser than the whole of medical science, and a few maverick doctors who ought to know better. Thousands of parents have been frightened into rejecting or delaying immunizations for their children. The immunization rate has dropped, resulting in the return of endemic measles in the U.K. and various outbreaks of vaccine-preventable diseases in the U.S. children have died. Herd immunity has been lost. The public health consequences are serious and are likely to get worse before they get better — a load of unscientific nonsense has put us all at risk.

And it would probably be a good idea to read the article that preceded this one as well. Between these two articles, I still can't understand how people buy into the lies and deceit of the anti-vax pro-disease brigade, but they do. We still have a lot of work to do!

Evolution:
For today, I wanted to have a more lighthearted bit of news. The Florida Citizens for Science sponsored a contest where you could draw a stick figure comic talking about some classic mistakes people make in thinking about science. My wife and I both entered the contest, and we both placed in the top ten (although I hear her entry beat mine, how humiliating!). Please head over to the page and check out the comics, I think some are indeed much more worthy than mine and I am glad they beat me.

Okay, that's all I have for today. I may end up being a bit quite over the next few days as I have job interviews and things like that to take care of.

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18 June 2009

Evolution, Vaccines, and Autism

Stayed out late having fun with my daughter, so I really didn't get a chance to blog much. So, today I will repost my blog from Facts, not Fantasy instead. Sorry, but it's the best I can do with the time constraint I am under.

Vaccines:
Here is an interview/book review where they discuss the eradication of Smallpox. Can you imagine if this effort had been fighting today's anti-vax pro-disease movement? Would countless deaths and the opportunity to make something just a distant memory be enough to get them to understand that in science, there is always a weighing of risk versus benefits? Or are they so self centered and craving attention, that they would rather put millions at risk?

Here is an OpEd piece discussing how emotions are horrible guides when it comes to the scientific. Particularly addressing the non-existent link between autism and vaccines. Well worth the read.

Autism:
One handicap of the autism spectrum disorders is being able to put names and faces together. That is why I found this article interesting. Especially the implications to the many other aspects of how people deal with others as well as objects even.

While the generally accepted view of autism is as a handicap, keep in mind that quite often it manifests as a narrow focus, or even a hyper focus. This has manifested in some research regarding problem solving. The key take away though is that there are still so many things that we just don't understand about autism and how it truly affects the individual.

Evolution:
First of all, I wish that there was a better way to bring pay journals to the public. In my daily search on articles, I ran into some very interesting stories that not only highlighted the interconnectedness of genetics and evolution, but also gave a great understanding to the complexity and wonder of it! Sadly, the journals are probably beyond the reach of most citizens.

Again, while abiogenesis isn't evolution, just the starting point, I found this article particularly fun and entertaining to read. I must say that it is pretty speculative, but if the speculations have any data to support them, they are worthy of pursuit. However, should the data not support the speculation, then the theory needs to be shelved (you know, that stuff that science does).

In tracking the amazing evolution of humans, the University of Leeds has tracked down some interesting information on how our behavioural and physical traits evolved. I am particularly interested in where else this REST protein shows up.

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10 June 2009

Creationism as a Thinking Disorder

The following article, Creationism as a Thinking Disorder, by Rev. Richard Bradshaw, Mental Health Chaplain, Teesside, England, was originally posted at No Answers in Genesis!, which I have re-posted here and edited for grammar/disambiguation, provides a good understanding of the creationists' mentality. I am reposting this from several other different blog entries that I have spread this around so folks can find it. And to that anonymous asshole that can't seem to read; look, this paragraph is mine, and the rest is a republishing...

Creationism as a Thinking Disorder

by Richard Bradshaw (Rev.)

Mental Health Chaplain (September 2007), Teesside, England.

Creationism is a curious phenomenon which calls for an explanation. Some would say that applies to all religious belief and maybe so, but there can be few philosophies in the modern West that display such intense irrationality; that require devotees to set their faces against such a vast body of modern knowledge – cosmological, biological, geological, anthropological. I was warned early on in my attempts to understand creationists that any attempt at debating with them is futile, and my experience confirms this, although I have had some perfectly civilised exchanges, verbal and written.

It is rather like dealing with anorexics: thin people who are convinced [that] they need to lose weight, to the point of putting themselves at risk. Plonk them on scales and the scales are wrong. Show them their emaciated reflection in a mirror and they will still see a plump person. [Try to reason] with them and you are part of the conspiracy to make them obese. While anorexia is normally referred to as an eating disorder it is also, clearly, a form of mental illness, whose victims can be sectioned and force-fed to keep them alive – which they will interpret as cruelty. Anorexia is something that happens to other people; they are perfectly normal.

The parallels with creationism are as obvious to anyone who has engaged with it as [the notion] will seem outrageous to creationists themselves -- which proves my point. Anorexics, victims of an eating disorder, cannot always be helped because the very condition leads to denial of what's wrong with them; creationism we might say is a thinking disorder which also generates denial about its own irrationality. In their own eyes, [it is the] creationists [who] are sane and impartial; the competent scientists; the faithful interpreters of scripture, and the true Christians. [As for] everyone else, [it is] their science [that is] worthless and their religion deviant, [but] they can't see it, so they're crazy; they have a religious disability. You can do the equivalent of holding a mirror up to the anorexic, which is to quote the immense body of scientific and theological expertise proving their errors; [however], to the creationist, this simply proves that you are part of a Satanic conspiracy to undermine the true faith.

Pursuing the parallel further, I think it follows that certain approaches to creationism should be avoided. You do not arrange debates between anorexics and people with a properly adjusted body image; you call sickness by its name and attempt to treat it. They are mentally ill, so they're not fully aware of what's wrong with them; you make allowances for this. Humour them, up to a point. So with creationists: their thinking is disordered; they're in denial about it; they're convinced you're out to get them, so to debate with them is not only futile, it's actually inappropriate, because it treats them as equal partners in a search for truth and insight – which they are not. It will not help their recovery. Books and pamphlets that put both sides of the case, as though there are arguments for and against creationism worthy of equal consideration, are similarly misguided. This would be like publishing the anorexic's argument for starving herself to death and weighing it respectfully against her consultant's view that she's a very ill person.

You do not, you cannot, respect an anorexic's beliefs; you respect her as a person, which of course is quite different. Ditto with creationists; ridiculous though their beliefs are, it's important to respect them as people. This will not be reciprocated. You may treat the creationist as a Christian, but he will not so regard you [as one] unless you buy into his world-view, which you can't. (If you don't profess to be a Christian anyway, you don't have the same problem.) [Furthermore], you do not put the anorexic in charge of the food counter at Wal-Mart, because she doesn't understand what a normal diet is; likewise, you don't let creationists anywhere near a school curriculum because they don't understand what education is, certainly not what science is. You don't discuss this with them, because they [will] think [that] your intentions are sinister; [they] can't grasp that [your intentions] might be honourable. That's what having a disorder implies. [Anorexics think they are] an overweight blob. [Creationists think that] evolution really is an atheistic ["fairy tale"] with no evidence to support it. Sure. Time for your medication.

There are really two issues worth discussing here and I think that those who are trying to cure the creationist disorder should concentrate on them, rather than on sterile debates about radiometric dating and imaginary subjects like "flood geology". The first has to do with protection. Anorexics need protection from themselves; schools need protection from creationists. The debate was over long ago. The question to be asked is not whether creationism can be taught, but simply how we can ensure that it isn't taught. Anywhere, ever.

The second really interests me. Anorexia is a condition with causes, typically in the patient's dysfunctional family circumstances. Understanding these can help towards a cure of existing victims and preventing the illness from flaring up in others. What are the conditions that give rise to the disorder of creationism? It's not just the decadence and insularity of American fundamentalism, with its focus on Biblical inerrancy; although this doesn't help, not all inerrantists are YE creationists. I think it's a combination of fundamentalist culture, a particular personality profile, the politicisation of American religion and the polarisation of its popular culture. These streams feed the swamp in which the malarial mosquitoes of creationism breed. How can we drain it?

For God's sake, for humanity's sake if you don't believe in God, isn't it obvious? Rational thinkers of the world, unite! The open, pluralist society which guarantees every one's freedom – including that of creationists themselves -- is under threat here. What does rational thinking mean if not shouting from the roof tops: Beware [of] absolutes!; Beware [of] who know they're right!; Beware [of] those who can't cope with shades of grey and who insist that everything is either black or white!; Beware [of] those who would send you to hell if you don't believe in their God!

There is more than one point of view on any subject and it's a pretty boring subject on which there are only two!

Fundamentalists, creationists, [and] sectarians in general, can be perfectly charming people; [however], their underlying position is unavoidably arrogant, and that's the great danger. They know they're right. Rational thinking is, or should be, about humility, but it doesn't preclude conviction. It doesn't have to be woolly. I know what I think, you know what you think, but we could both be wrong, or only partly right; let's talk about it and by discussing what divides us arrive at a truth greater than either of us understood before. I believe in one God, you believe in another God, and she doesn't believe in God at all. Isn't that interesting? Let's discuss it and see where we get. It might be that we all finish up believing in something none of us do just at the moment: such as (and how many creationists dare play with this thought), whether or not there is a God; whether God can sensibly be said either to exist or not to exist, may not be the issue. Perhaps the question really is: how does "God" language work for me, and how does her "no God" language work for her? Do we perhaps have more values in common than we realise?

Rational thought is a precondition of cultural health. Rational thought provides for the flourishing of science. Absolutist positions, whether rooted in religious or secular ideology, lead to totalitarianism. Call it the Taliban, call it Stalinism, call it creationism, call it the Spanish Inquisition, any mindset that believes it alone has the truth and damns all opposition to hell, is the enemy of the free society. As someone once said, we need seekers after the truth, but protection from anyone who is dead certain he's found it.

For the evil of creationism to triumph, it is only necessary that all the good rational thinkers do nothing. [Also], perhaps, with Ken Ham's new museum drawing crowds, not all of whom can have paid their entrance fee just to have a laugh, now is the hour for rational thinkers to gird their loins.

Though I could, of course, be quite wrong about that.

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31 May 2009

15 Answers to Creationist Nonsense

Evolution:
Today I am only going to cover evolution with a reprint of an article published in Scientific American back in July 2002. I plan to take some of these and reprint them on the evolution page I have set up at Facts, not Fantasy as soon as I have permission from the author (or use as many elements as I can reasonably use). If anything, it's funny to see how many of these are the SAME bloody arguments that I wrote up incredibly similar responses to... It's almost like these people have a thinking disorder, and are incapable of seeing it.

When Charles Darwin introduced the theory of evolution through natural selection 143 years ago, the scientists of the day argued over it fiercely, but the massing evidence from paleontology, genetics, zoology, molecular biology and other fields gradually established evolution's truth beyond reasonable doubt. Today that battle has been won everywhere--except in the public imagination.

Embarrassingly, in the 21st century, in the most scientifically advanced nation the world has ever known, creationists can still persuade politicians, judges and ordinary citizens that evolution is a flawed, poorly supported fantasy. They lobby for creationist ideas such as "intelligent design" to be taught as alternatives to evolution in science classrooms. As this article goes to press, the Ohio Board of Education is debating whether to mandate such a change. Some antievolutionists, such as Philip E. Johnson, a law professor at the University of California at Berkeley and author of Darwin on Trial, admit that they intend for intelligent-design theory to serve as a "wedge" for reopening science classrooms to discussions of God.

Besieged teachers and others may increasingly find themselves on the spot to defend evolution and refute creationism. The arguments that creationists use are typically specious and based on misunderstandings of (or outright lies about) evolution, but the number and diversity of the objections can put even well-informed people at a disadvantage.

To help with answering them, the following list rebuts some of the most common "scientific" arguments raised against evolution. It also directs readers to further sources for information and explains why creation science has no place in the classroom.

1. Evolution is only a theory. It is not a fact or a scientific law.

Many people learned in elementary school that a theory falls in the middle of a hierarchy of certainty--above a mere hypothesis but below a law. Scientists do not use the terms that way, however. According to the National Academy of Sciences (NAS), a scientific theory is "a well-substantiated explanation of some aspect of the natural world that can incorporate facts, laws, inferences, and tested hypotheses." No amount of validation changes a theory into a law, which is a descriptive generalization about nature. So when scientists talk about the theory of evolution--or the atomic theory or the theory of relativity, for that matter--they are not expressing reservations about its truth.

In addition to the theory of evolution, meaning the idea of descent with modification, one may also speak of the fact of evolution. The NAS defines a fact as "an observation that has been repeatedly confirmed and for all practical purposes is accepted as 'true.'" The fossil record and abundant other evidence testify that organisms have evolved through time. Although no one observed those transformations, the indirect evidence is clear, unambiguous and compelling.

All sciences frequently rely on indirect evidence. Physicists cannot see subatomic particles directly, for instance, so they verify their existence by watching for telltale tracks that the particles leave in cloud chambers. The absence of direct observation does not make physicists' conclusions less certain.

2. Natural selection is based on circular reasoning: the fittest are those who survive, and those who survive are deemed fittest.

"Survival of the fittest" is a conversational way to describe natural selection, but a more technical description speaks of differential rates of survival and reproduction. That is, rather than labeling species as more or less fit, one can describe how many offspring they are likely to leave under given circumstances. Drop a fast-breeding pair of small-beaked finches and a slower-breeding pair of large-beaked finches onto an island full of food seeds. Within a few generations the fast breeders may control more of the food resources. Yet if large beaks more easily crush seeds, the advantage may tip to the slow breeders. In a pioneering study of finches on the Gal pagos Islands, Peter R. Grant of Princeton University observed these kinds of population shifts in the wild [see his article "Natural Selection and Darwin's Finches"; Scientific American, October 1991].

The key is that adaptive fitness can be defined without reference to survival: large beaks are better adapted for crushing seeds, irrespective of whether that trait has survival value under the circumstances.

3. Evolution is unscientific, because it is not testable or falsifiable. It makes claims about events that were not observed and can never be re-created.

This blanket dismissal of evolution ignores important distinctions that divide the field into at least two broad areas: microevolution and macroevolution. Microevolution looks at changes within species over time--changes that may be preludes to speciation, the origin of new species. Macroevolution studies how taxonomic groups above the level of species change. Its evidence draws frequently from the fossil record and DNA comparisons to reconstruct how various organisms may be related.

These days even most creationists acknowledge that microevolution has been upheld by tests in the laboratory (as in studies of cells, plants and fruit flies) and in the field (as in Grant's studies of evolving beak shapes among Gal pagos finches). Natural selection and other mechanisms--such as chromosomal changes, symbiosis and hybridization--can drive profound changes in populations over time.

The historical nature of macroevolutionary study involves inference from fossils and DNA rather than direct observation. Yet in the historical sciences (which include astronomy, geology and archaeology, as well as evolutionary biology), hypotheses can still be tested by checking whether they accord with physical evidence and whether they lead to verifiable predictions about future discoveries. For instance, evolution implies that between the earliest-known ancestors of humans (roughly five million years old) and the appearance of anatomically modern humans (about 100,000 years ago), one should find a succession of hominid creatures with features progressively less apelike and more modern, which is indeed what the fossil record shows. But one should not--and does not--find modern human fossils embedded in strata from the Jurassic period (144 million years ago). Evolutionary biology routinely makes predictions far more refined and precise than this, and researchers test them constantly.

Evolution could be disproved in other ways, too. If we could document the spontaneous generation of just one complex life-form from inanimate matter, then at least a few creatures seen in the fossil record might have originated this way. If superintelligent aliens appeared and claimed credit for creating life on earth (or even particular species), the purely evolutionary explanation would be cast in doubt. But no one has yet produced such evidence.

It should be noted that the idea of falsifiability as the defining characteristic of science originated with philosopher Karl Popper in the 1930s. More recent elaborations on his thinking have expanded the narrowest interpretation of his principle precisely because it would eliminate too many branches of clearly scientific endeavor.

4. Increasingly, scientists doubt the truth of evolution.

No evidence suggests that evolution is losing adherents. Pick up any issue of a peer-reviewed biological journal, and you will find articles that support and extend evolutionary studies or that embrace evolution as a fundamental concept.

Conversely, serious scientific publications disputing evolution are all but nonexistent. In the mid-1990s George W. Gilchrist of the University of Washington surveyed thousands of journals in the primary literature, seeking articles on intelligent design or creation science. Among those hundreds of thousands of scientific reports, he found none. In the past two years, surveys done independently by Barbara Forrest of Southeastern Louisiana University and Lawrence M. Krauss of Case Western Reserve University have been similarly fruitless.

Creationists retort that a closed-minded scientific community rejects their evidence. Yet according to the editors of Nature, Science and other leading journals, few antievolution manuscripts are even submitted. Some antievolution authors have published papers in serious journals. Those papers, however, rarely attack evolution directly or advance creationist arguments; at best, they identify certain evolutionary problems as unsolved and difficult (which no one disputes). In short, creationists are not giving the scientific world good reason to take them seriously.

5. The disagreements among even evolutionary biologists show how little solid science supports evolution.

Evolutionary biologists passionately debate diverse topics: how speciation happens, the rates of evolutionary change, the ancestral relationships of birds and dinosaurs, whether Neandertals were a species apart from modern humans, and much more. These disputes are like those found in all other branches of science. Acceptance of evolution as a factual occurrence and a guiding principle is nonetheless universal in biology.

Unfortunately, dishonest creationists have shown a willingness to take scientists' comments out of context to exaggerate and distort the disagreements. Anyone acquainted with the works of paleontologist Stephen Jay Gould of Harvard University knows that in addition to co-authoring the punctuated-equilibrium model, Gould was one of the most eloquent defenders and articulators of evolution. (Punctuated equilibrium explains patterns in the fossil record by suggesting that most evolutionary changes occur within geologically brief intervals--which may nonetheless amount to hundreds of generations.) Yet creationists delight in dissecting out phrases from Gould's voluminous prose to make him sound as though he had doubted evolution, and they present punctuated equilibrium as though it allows new species to materialize overnight or birds to be born from reptile eggs.

When confronted with a quotation from a scientific authority that seems to question evolution, insist on seeing the statement in context. Almost invariably, the attack on evolution will prove illusory.

6. If humans descended from monkeys, why are there still monkeys?

This surprisingly common argument reflects several levels of ignorance about evolution. The first mistake is that evolution does not teach that humans descended from monkeys; it states that both have a common ancestor.

The deeper error is that this objection is tantamount to asking, "If children descended from adults, why are there still adults?" New species evolve by splintering off from established ones, when populations of organisms become isolated from the main branch of their family and acquire sufficient differences to remain forever distinct. The parent species may survive indefinitely thereafter, or it may become extinct.

7. Evolution cannot explain how life first appeared on earth.

The origin of life remains very much a mystery, but biochemists have learned about how primitive nucleic acids, amino acids and other building blocks of life could have formed and organized themselves into self-replicating, self-sustaining units, laying the foundation for cellular biochemistry. Astrochemical analyses hint that quantities of these compounds might have originated in space and fallen to earth in comets, a scenario that may solve the problem of how those constituents arose under the conditions that prevailed when our planet was young.

Creationists sometimes try to invalidate all of evolution by pointing to science's current inability to explain the origin of life. But even if life on earth turned out to have a nonevolutionary origin (for instance, if aliens introduced the first cells billions of years ago), evolution since then would be robustly confirmed by countless microevolutionary and macroevolutionary studies.

8. Mathematically, it is inconceivable that anything as complex as a protein, let alone a living cell or a human, could spring up by chance.

Chance plays a part in evolution (for example, in the random mutations that can give rise to new traits), but evolution does not depend on chance to create organisms, proteins or other entities. Quite the opposite: natural selection, the principal known mechanism of evolution, harnesses nonrandom change by preserving "desirable" (adaptive) features and eliminating "undesirable" (nonadaptive) ones. As long as the forces of selection stay constant, natural selection can push evolution in one direction and produce sophisticated structures in surprisingly short times.

As an analogy, consider the 13-letter sequence "TOBEORNOTTOBE." Those hypothetical million monkeys, each pecking out one phrase a second, could take as long as 78,800 years to find it among the 2613 sequences of that length. But in the 1980s Richard Hardison of Glendale College wrote a computer program that generated phrases randomly while preserving the positions of individual letters that happened to be correctly placed (in effect, selecting for phrases more like Hamlet's). On average, the program re-created the phrase in just 336 iterations, less than 90 seconds. Even more amazing, it could reconstruct Shakespeare's entire play in just four and a half days.

9. The Second Law of Thermodynamics says that systems must become more disordered over time. Living cells therefore could not have evolved from inanimate chemicals, and multicellular life could not have evolved from protozoa.

This argument derives from a misunderstanding of the Second Law. If it were valid, mineral crystals and snowflakes would also be impossible, because they, too, are complex structures that form spontaneously from disordered parts.

The Second Law actually states that the total entropy of a closed system (one that no energy or matter leaves or enters) cannot decrease. Entropy is a physical concept often casually described as disorder, but it differs significantly from the conversational use of the word.

More important, however, the Second Law permits parts of a system to decrease in entropy as long as other parts experience an offsetting increase. Thus, our planet as a whole can grow more complex because the sun pours heat and light onto it, and the greater entropy associated with the sun's nuclear fusion more than rebalances the scales. Simple organisms can fuel their rise toward complexity by consuming other forms of life and nonliving materials.

10. Mutations are essential to evolution theory, but mutations can only eliminate traits. They cannot produce new features.

On the contrary, biology has catalogued many traits produced by point mutations (changes at precise positions in an organism's DNA)--bacterial resistance to antibiotics, for example.

Mutations that arise in the homeobox (Hox) family of development-regulating genes in animals can also have complex effects. Hox genes direct where legs, wings, antennae and body segments should grow. In fruit flies, for instance, the mutation called Antennapedia causes legs to sprout where antennae should grow. These abnormal limbs are not functional, but their existence demonstrates that genetic mistakes can produce complex structures, which natural selection can then test for possible uses.

Moreover, molecular biology has discovered mechanisms for genetic change that go beyond point mutations, and these expand the ways in which new traits can appear. Functional modules within genes can be spliced together in novel ways. Whole genes can be accidentally duplicated in an organism's DNA, and the duplicates are free to mutate into genes for new, complex features. Comparisons of the DNA from a wide variety of organisms indicate that this is how the globin family of blood proteins evolved over millions of years.

11. Natural selection might explain microevolution, but it cannot explain the origin of new species and higher orders of life.

Evolutionary biologists have written extensively about how natural selection could produce new species. For instance, in the model called allopatry, developed by Ernst Mayr of Harvard University, if a population of organisms were isolated from the rest of its species by geographical boundaries, it might be subjected to different selective pressures. Changes would accumulate in the isolated population. If those changes became so significant that the splinter group could not or routinely would not breed with the original stock, then the splinter group would be reproductively isolated and on its way toward becoming a new species.

Natural selection is the best studied of the evolutionary mechanisms, but biologists are open to other possibilities as well. Biologists are constantly assessing the potential of unusual genetic mechanisms for causing speciation or for producing complex features in organisms. Lynn Margulis of the University of Massachusetts at Amherst and others have persuasively argued that some cellular organelles, such as the energy-generating mitochondria, evolved through the symbiotic merger of ancient organisms. Thus, science welcomes the possibility of evolution resulting from forces beyond natural selection. Yet those forces must be natural; they cannot be attributed to the actions of mysterious creative intelligences whose existence, in scientific terms, is unproved.

12. Nobody has ever seen a new species evolve.

Speciation is probably fairly rare and in many cases might take centuries. Furthermore, recognizing a new species during a formative stage can be difficult, because biologists sometimes disagree about how best to define a species. The most widely used definition, Mayr's Biological Species Concept, recognizes a species as a distinct community of reproductively isolated populations--sets of organisms that normally do not or cannot breed outside their community. In practice, this standard can be difficult to apply to organisms isolated by distance or terrain or to plants (and, of course, fossils do not breed). Biologists therefore usually use organisms' physical and behavioral traits as clues to their species membership.

Nevertheless, the scientific literature does contain reports of apparent speciation events in plants, insects and worms. In most of these experiments, researchers subjected organisms to various types of selection--for anatomical differences, mating behaviors, habitat preferences and other traits--and found that they had created populations of organisms that did not breed with outsiders. For example, William R. Rice of the University of New Mexico and George W. Salt of the University of California at Davis demonstrated that if they sorted a group of fruit flies by their preference for certain environments and bred those flies separately over 35 generations, the resulting flies would refuse to breed with those from a very different environment.

13. Evolutionists cannot point to any transitional fossils--creatures that are half reptile and half bird, for instance.

Actually, paleontologists know of many detailed examples of fossils intermediate in form between various taxonomic groups. One of the most famous fossils of all time is Archaeopteryx, which combines feathers and skeletal structures peculiar to birds with features of dinosaurs. A flock's worth of other feathered fossil species, some more avian and some less, has also been found. A sequence of fossils spans the evolution of modern horses from the tiny Eohippus. Whales had four-legged ancestors that walked on land, and creatures known as Ambulocetus and Rodhocetus helped to make that transition [see "The Mammals That Conquered the Seas," by Kate Wong; Scientific American, May]. Fossil seashells trace the evolution of various mollusks through millions of years. Perhaps 20 or more hominids (not all of them our ancestors) fill the gap between Lucy the australopithecine and modern humans.

Creationists, though, dismiss these fossil studies. They argue that Archaeopteryx is not a missing link between reptiles and birds--it is just an extinct bird with reptilian features. They want evolutionists to produce a weird, chimeric monster that cannot be classified as belonging to any known group. Even if a creationist does accept a fossil as transitional between two species, he or she may then insist on seeing other fossils intermediate between it and the first two. These frustrating requests can proceed ad infinitum and place an unreasonable burden on the always incomplete fossil record.

Nevertheless, evolutionists can cite further supportive evidence from molecular biology. All organisms share most of the same genes, but as evolution predicts, the structures of these genes and their products diverge among species, in keeping with their evolutionary relationships. Geneticists speak of the "molecular clock" that records the passage of time. These molecular data also show how various organisms are transitional within evolution.

14. Living things have fantastically intricate features--at the anatomical, cellular and molecular levels--that could not function if they were any less complex or sophisticated. The only prudent conclusion is that they are the products of intelligent design, not evolution.

This "argument from design" is the backbone of most recent attacks on evolution, but it is also one of the oldest. In 1802 theologian William Paley wrote that if one finds a pocket watch in a field, the most reasonable conclusion is that someone dropped it, not that natural forces created it there. By analogy, Paley argued, the complex structures of living things must be the handiwork of direct, divine invention. Darwin wrote On the Origin of Species as an answer to Paley: he explained how natural forces of selection, acting on inherited features, could gradually shape the evolution of ornate organic structures.

Generations of creationists have tried to counter Darwin by citing the example of the eye as a structure that could not have evolved. The eye's ability to provide vision depends on the perfect arrangement of its parts, these critics say. Natural selection could thus never favor the transitional forms needed during the eye's evolution--what good is half an eye? Anticipating this criticism, Darwin suggested that even "incomplete" eyes might confer benefits (such as helping creatures orient toward light) and thereby survive for further evolutionary refinement. Biology has vindicated Darwin: researchers have identified primitive eyes and light-sensing organs throughout the animal kingdom and have even tracked the evolutionary history of eyes through comparative genetics. (It now appears that in various families of organisms, eyes have evolved independently.)

Today's intelligent-design advocates are more sophisticated than their predecessors, but their arguments and goals are not fundamentally different. They criticize evolution by trying to demonstrate that it could not account for life as we know it and then insist that the only tenable alternative is that life was designed by an unidentified intelligence.

15. Recent discoveries prove that even at the microscopic level, life has a quality of complexity that could not have come about through evolution.

"Irreducible complexity" is the battle cry of Michael J. Behe of Lehigh University, author of Darwin's Black Box: The Biochemical Challenge to Evolution. As a household example of irreducible complexity, Behe chooses the mousetrap--a machine that could not function if any of its pieces were missing and whose pieces have no value except as parts of the whole. What is true of the mousetrap, he says, is even truer of the bacterial flagellum, a whiplike cellular organelle used for propulsion that operates like an outboard motor. The proteins that make up a flagellum are uncannily arranged into motor components, a universal joint and other structures like those that a human engineer might specify. The possibility that this intricate array could have arisen through evolutionary modification is virtually nil, Behe argues, and that bespeaks intelligent design. He makes similar points about the blood's clotting mechanism and other molecular systems.

Yet evolutionary biologists have answers to these objections. First, there exist flagellae with forms simpler than the one that Behe cites, so it is not necessary for all those components to be present for a flagellum to work. The sophisticated components of this flagellum all have precedents elsewhere in nature, as described by Kenneth R. Miller of Brown University and others. In fact, the entire flagellum assembly is extremely similar to an organelle that Yersinia pestis, the bubonic plague bacterium, uses to inject toxins into cells.

The key is that the flagellum's component structures, which Behe suggests have no value apart from their role in propulsion, can serve multiple functions that would have helped favor their evolution. The final evolution of the flagellum might then have involved only the novel recombination of sophisticated parts that initially evolved for other purposes. Similarly, the blood-clotting system seems to involve the modification and elaboration of proteins that were originally used in digestion, according to studies by Russell F. Doolittle of the University of California at San Diego. So some of the complexity that Behe calls proof of intelligent design is not irreducible at all.

Complexity of a different kind--"specified complexity"--is the cornerstone of the intelligent-design arguments of William A. Dembski of Baylor University in his books The Design Inference and No Free Lunch. Essentially his argument is that living things are complex in a way that undirected, random processes could never produce. The only logical conclusion, Dembski asserts, in an echo of Paley 200 years ago, is that some superhuman intelligence created and shaped life.

Dembski's argument contains several holes. It is wrong to insinuate that the field of explanations consists only of random processes or designing intelligences. Researchers into nonlinear systems and cellular automata at the Santa Fe Institute and elsewhere have demonstrated that simple, undirected processes can yield extraordinarily complex patterns. Some of the complexity seen in organisms may therefore emerge through natural phenomena that we as yet barely understand. But that is far different from saying that the complexity could not have arisen naturally.

"Creation science" is a contradiction in terms. A central tenet of modern science is methodological naturalism--it seeks to explain the universe purely in terms of observed or testable natural mechanisms. Thus, physics describes the atomic nucleus with specific concepts governing matter and energy, and it tests those descriptions experimentally. Physicists introduce new particles, such as quarks, to flesh out their theories only when data show that the previous descriptions cannot adequately explain observed phenomena. The new particles do not have arbitrary properties, moreover--their definitions are tightly constrained, because the new particles must fit within the existing framework of physics.

In contrast, intelligent-design theorists invoke shadowy entities that conveniently have whatever unconstrained abilities are needed to solve the mystery at hand. Rather than expanding scientific inquiry, such answers shut it down. (How does one disprove the existence of omnipotent intelligences?)

Intelligent design offers few answers. For instance, when and how did a designing intelligence intervene in life's history? By creating the first DNA? The first cell? The first human? Was every species designed, or just a few early ones? Proponents of intelligent-design theory frequently decline to be pinned down on these points. They do not even make real attempts to reconcile their disparate ideas about intelligent design. Instead they pursue argument by exclusion--that is, they belittle evolutionary explanations as far-fetched or incomplete and then imply that only design-based alternatives remain.

Logically, this is misleading: even if one naturalistic explanation is flawed, it does not mean that all are. Moreover, it does not make one intelligent-design theory more reasonable than another. Listeners are essentially left to fill in the blanks for themselves, and some will undoubtedly do so by substituting their religious beliefs for scientific ideas.

Time and again, science has shown that methodological naturalism can push back ignorance, finding increasingly detailed and informative answers to mysteries that once seemed impenetrable: the nature of light, the causes of disease, how the brain works. Evolution is doing the same with the riddle of how the living world took shape. Creationism, by any name, adds nothing of intellectual value to the effort.


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15 May 2009

More Evolution Stuff

One of the sites that I am working on (along with some other most excellent people) is Facts, not Fantasy. Each day, I go there to enter a blog about evolution, vaccines, and autism (or at least that's the format I am using now). So today I had a praticularly good entry on evolution, and thought I would repost it here.

While abiogenesis has nothing itself to do with evolution, it is considered one of those "defining gaps" that are used to bludgeon evolution with. That's why it's exciting to see this article about how RNA could be the starting point for life itself. Once you have any polymer capable of self-replication, you'll end up with more of those (and more of the ones that do it better). Since these are more abundant, they're more likely to be trapped inside vesicles that spontaneously form and divide by mechanical forces. That's basically a cell. Pretty much everything else is gravy that can be explained by natural selection. (There is also this article on the RNA chemistry.)

I guess what this really means is that yet another gap for that god fellow just shrunk. Don't you just wish that people would stop resorting to the supernatural when they aren't intelectually capable of saying that they don't know? *sigh*

There is also news of a new primate fossil that was found. This one goes back to about 47 million years ago, so is an even further precursor to the primate line. What is fascinating about this one is that basically evolution predicts that this type of fossil would exist, while ID or creationism says nothing about it. Not that I would expect IDiots and people with their brains stuck in the bronze age to actualy have the neural capacity for predictions and the scientific method.

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13 May 2009

Does Evolution Contradict Religion?


With the work I have been doing lately on the Facts, not Fantasy site, I have been just doing a lot of research. Now, to be honest, I am quite the anti-theist type of person, but since that site is supposed to be more educational, I am taking a much more neutral approach to the conflict between science and religion. So I was interested in this particular article I found. Especially considering that the writer is also an avowed atheist, and writes about it a great deal more than I do.

Here is the text of the article:
Does Evolution Contradict Religion?

This is a very important and fundamental question; there is so much debate in America over evolution and the nature of life that it is worth considering whether or not the theory of evolution contradicts religious beliefs. However, the question is also too broad. There is no such thing as "religious beliefs," without context or content.

Because of this, the only way to really answer the question is to say: sometimes yes, sometimes no. Evolution does contradict certain religious beliefs and even at times, certain religions. Evolution is also readily compatible with other religious beliefs and other religions. Indeed, it should be noted that there does not appear to be any contradiction between evolution and any one entire religious tradition.

The reason for this is that any large religious tradition with much of a history behind it will contain enough variety that even if there are groups which object to evolution, there will be groups which either welcome or simply ignore evolution. Sometimes this multiplicity of ways in which a religion can be interpreted may be a source of embarrassment - after all, it is hard to claim a religion to be True when there is so little agreement as to just what the religion really is.

On the other hand, it is also a principle of evolution that those individuals which are best able to adapt to changing environments are the most likely to survive, reproduce, and pass on their genes. Perhaps it also true for belief systems - those with the widest internal variety are best able to adapt to changing social circumstances and pass themselves along to succeeding generations. It may be difficult for some religions and some religious traditions to survive in the scientific environment of evolutionary theory, but not impossible.

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29 April 2009

Human-chauvinism

When debating with folks about evolution, invariably I get told that humans are somehow unique. That perhaps we really aren't just highly evolved animals. In many cases, the person making that assertion insists that humans are the only animal that does this or that thing. Sadly, it seems for those who hold that opinion that there are fewer and fewer things that we do that other animals don't do. New Scientist has an interesting article and a video on this (sadly you need a subscription to get to all of it).

Furthermore, this argument even seems to come from more skeptical people when debating what could lead to intelligence "elsewhere" (i.e. not on earth). We seem to be so stuck on our one data point that we forget that nature only managed to get to our state of being through many fits and starts. And we aren't very well put together either. As I said in a previous blog, evolution has no goal, aside from propegating a particualr species. The ones that do it well survive, those that don't end up extinct.

So, the point of this blog? Don't be such a human chauvinist!

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28 April 2009

By the way, Abiogenesis is NOT Evolution

I don't know how many times I have to repeat that evolution has nothing to do with abiogenesis, yet the strawman of "how did life start" always creeps up in every evolution debate... Abiogenesis is a very new and exciting field of study though. That's why I was quite thrilled to find this article:

First Life and Next Life
Synthetic biology is a new field, but it's targeting an old question: How did life begin?


After reading that article, I just gotta say that is so frikkin' cool! Of course, as Carl Sagan once said, every scientific endeavour has some moral ambiguity to it. I can see this having some serious ramifications if we aren't diligent in the controls and methodology of all this.

As I said, the discussion on abiogenesis generally starts out in a discussion of evolution, and sometimes I just can't understand the rigid denial of actual concrete evidence, combined with horribly flawed logic that some of these nutters employ (not to mention the out and out lies). You can point to the mountain of evidence for evolution all you want. It’s just that the creationists and IDiots will proclaim, “Hah! It’s not a mountain, it’s half an inch under being a mountain. Nice try. Now, see, my mountain is tall enough to be a mountain.”
“But, that’s just a tent. Look at the gauze-like fabric and the plastic structure holding it up. You have a tent, and a flimsy one at that.”
“At least it’s as tall as mountain.”

Which, if you think about it, is pretty much the way the conversation always turns out.

Creationist dimwits should also invest in mirrors. The knucklewalkers they’d see staring back at them would be proof enough of human devolution.

What continues to be most fascinating, however is how consistently repetitive and predictable all these crank arguments are and will be, regardless of whether they are presented to support a belief in gods, or flying saucers, or ghosts, or…whatever.

To summarize:
•Science is false, my belief is true.
•Your evidence means nothing. I can say this despite the fact I have no idea what it even means.
•I have no evidence but it doesn’t matter because…(I have faith, the government is hiding it, it’s beyond the powers of science to reveal, etc.).
•I only came here to see if anyone had an open mind.
•My own closed mind doesn’t count.
•People who don’t believe as I do are arrogant jerks.
•I guess no one here wants to know the truth.
•Good bye.

Now if only they’d reach that last step a little more quickly (and even permanently?).

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19 April 2009

Book Review and a Comment...

For something different, today we have a book review from Dr. Phil Plait's excellent blog. Now, he may use some terminology that is less than kind perhaps, but I think it comes from dealing with the rampant dishonesty and lying tactics used by creationists in our school systems. I only recently got this book, so I am only on chapter two, but I really sincerely wish that the folks who need this book would actually read it. Add to the list, The Ancestor's Tale as well. Two books you all ought to read:

(Now, I tried to post this review on my local paper. Sadly, the system they use there is called Pluck, and let me tell you it's "plucked" up to say the least. That little introductory paragraph got left off, and I didn't notice it. Of course, since I link to Dr.Plait's excellent blog in the blogroll over at the paper, I'm sure someone would know for sure where it comes from... What happens? Well, one of the christians that posts there is instantly accusing me of nefarious deeds and calling me out in public... Such a christian attitude, wouldn't you say? And in the comments, I actually go so far as to thank him for pointing out the serious omission... I guess being judgemental comes naturally to them in that regard...)

Anyway, here is the review:

As an astronomer, my familiarity with the details of biological evolution are about on par with that of an interested layman (though being trained scientifically helps with that understanding, adding insight to the process of the scientific endeavor). I’m familiar with the concepts of descent with modification, genetic mutations, natural pressures for adaptations, and the like. I’m less familiar with other aspects, like allele frequencies, how specifically pressures can change adaptations, and what transitional fossils are in the record, but I can probably hold my own against your run-of-the-mill creationist.

Jerry Coyne’s book cover of Why Evolution is True

That’s why I loved the book Why Evolution is True by biologist Jerry Coyne. This is a clear, easy-to-understand work that shows you — with no compromising and no backing down — that evolution has occurred, the evidence is overwhelming, and that no other explanation for what we see around us makes sense.


He goes through many, many arguments about this: how we do see adaptation to changing environments, how the DNA records support the change in the genome of life with time and environment, how fossils support evolutionary change.

Moreover, he shows that the scientific theory of evolution by natural (and in some cases, sexual) selection makes clear predictions which are borne out by observations. And on top of that he shows why these conclusions make no sense at all if you think there is some Creator that made us the way we are out of thin air (or dust, I suppose).


I was particularly struck by the concept of geographic isolation and how that affects evolution (perhaps because I spent more than a week last year touring the Galapagos Islands). Species isolated on islands adapt genetically and morphologically (or vice-versa) to the environment, and you can see how there are changes in those species as they radiate out to other nearby islands. We only see species on those islands that come from nearby land masses, as you’d expect from natural methods of dispersion over long time periods (but not what you’d expect for a Creator to simply pop life into existence). And all of this fits in with what geologists see by way of plate tectonics and continental drift.


Creationists love to try to pick apart evolution, looking at minor details in isolation and saying it doesn’t make sense. But they’re wrong: evolution is a beautiful tapestry, a complex fabric of countless threads woven together into a grand picture of life on Earth. And it all holds together.


I strongly recommend this book to anyone with even a passing interest in evolution, or the manufactured controversy of creationism. Coyne’s work is complete and convincing, slamming the door firmly closed on young-Earth creationism. If you have to deal with creationists in your life, this book is something you should keep very handy.


Bonus: my friend Joel Parker interviewed Coyne on his radio show How on Earth (you can get the MP3 through this direct link), and another friend D. J. Grothe interviewed Coyne on his podcast Point of Inquiry.


And I’ll leave you with this, Coyne’s perfect summation of the situation (from pages 222-223 of the book):


Every day, hundreds of observations and experiments pour into the hopper of the scientific literature… and every fact that has something to do with evolution confirms its truth. Every fossil that we find, every DNA molecule that we sequence, every organ system that we dissect supports the idea that species evolved from common ancestors. Despite innumerable possible explanations that could prove evolution untrue, we don’t have a single one. We don’t find mammals in Precambrian rocks, humans in the same layers as dinosaurs, or any other fossils out of evolutionary order. DNA sequencing supports the evolutionary relationships of species originally deduced from the fossil record. And, as natural selection predicts, we find no species with adaptations that benefit only a different species. We do find dead genes and vestigial organs, incomprehensible under the idea of special creation. Despite a million chances to be wrong, evolution always comes up right. That is as close as we can get to a scientific fact.

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28 March 2009

Texas: Sofa King Retarded


Dr. Phil Plait has a summary of the TRAVESTY that happened in Texas (and apparently Florida is attempting to follow suit). Basically the LYING young earth creationist got their language into the educational standards... I am amazed at how blatantly these people will LIE and DECEIVE to push their bronze age fairy tale agenda.

Here is Dr. Plait's, write up on the topic. As he says, I urge all parents who live in reality to get involved with their education board, and keep their children in THIS century, and not back in the dark ages.

I am so mad that I can barely type without wanting to go on a murderous spree of eliminating these dangers to humanity and reality... Just read Dr.Plait's posts. He says it well.

And the "humerous" picture up above... Well, suffice it to say that I really feel there is a lot of validity to it. Sorry, it may be harsh, but all evidence points to it. Especially with the fucktardery going on with our education system and the destruction of our children's futures. Only a fucking retard would willingly handicap the future of their offspring, and that's what these retards are doing.

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23 March 2009

Evolution Doesn't have a Goal


Usually the objections to evolution I encounter when discussing the subject with a creationist are based in misunderstanding of what evolutionary theory is, what it actually states and what it does not. Commonly the objections are nothing more than a straw man fallacy.

Straw man fallacy:
“A straw man argumentis an informal fallacy based on misrepresentation of an opponent's position. To "attack a straw man" is to create the illusion of having refuted a proposition by substituting a superficially similar proposition (the "straw man"), and refuting it, without ever having actually refuted the original position.”

For example I commonly hear things such as, “How could an eye just pop into existence”. If evolutionary theory stated that something as complex as an eye could just “pop into existence”, then it clearly would be a ridiculous theory. However the theory does not claim anything like that, and this is a typical straw man fallacy born out of misunderstanding and ignorance.

I will attempt to simply what evolutionary theory does state, and what it does not with regard to common misconceptions I have heard.

Misconception of Evolution having a goal.
Misconception of species changing rather than splitting.
Misconception of Micro Evolution.
Misconception of intermediate forms.

I have started with the misconception of Evolution having a goal because I believe it will be a good place to cover the basics and clear away some extremely common misconceptions which hinder any further learning if they are in place.

Evolution via Natural selection is essentially made up by two important facts. Variety among individuals, and selection pressures on reproduction. To put it simply, if one individual is better equipped to breed than another, the chances that it will breed are higher than the other less well equipped individual. For example a fast and strong cheetah has a much better chance of surviving than a slower and weaker cheetah does. The faster and stronger cheetah is likely better at catching it's prey, it therefore will have a better chance of staying alive longer than a cheetah who is failing to catch its prey, and therefore starving. The physical variation between the two differentiate how successful they are likely to be at surviving in a competitive environment. If the weaker cheetah dies of starvation at a young age, it is unlikely to have bred and it is therefore unlikely to have passed on its genes to offspring. The strong cheetah however, which is living a long successful life may have bred many times, producing offspring which contain the successful genes which made it strong and fast.

Lets rewind here a second however. What would make one cheetah strong, and one weak, and where does this variation among individuals come from?

Every individuals body is made using a DNA recipe which is unique to that individual. DNA – Deoxyribonucleic acid - is essentially a very long molecule which interacts with other molecules/chemicals to form a chain reaction of physical processes which build bodies. Bodies are made of cells, which contain the DNA recipe within them (in the nucleus). These cells must replicate in order to form large and complex bodies made up of billions of them. It is useful to think of your DNA as a recipe for building your body, not as a predefined plan or blueprint.

Everyone's DNA varies because when the DNA replicates itself to build cells, the physical process can go slightly wrong, and the replication is not perfect. You and your next door neighbors DNA varies by about 3 million differences in the DNA recipe.
You have about 3 billion bits of code in your recipe. If your neighbor had the exact same 3 billion characters in their DNA recipe, the physical process of building the body from the recipe would happen the same way as yours, and you would look identical. This is not the case though because changes in the recipe happen randomly, and regularly, and your DNA took a different journey through your ancestors to end up with you. When your mother and your father's DNA combine to create your DNA, your DNA contains copies of genes they both posses which make them different individuals (Roughly 50% from your mother and 50% from your father). This newly combined DNA contains differences that were passed down from past ancestors via your mothers lineage, and via your fathers lineage. This is what enables your parents to have variance in their own DNA recipes. In addition to this, the newly combined DNA that forms you, will also contain mutations that have occurred in your mother and fathers own DNA since it was first combined from their mother and father.

So going back to the cheetahs, if a mutation happens in part of the DNA recipe which dictates how the chain reaction of physical process will work to build leg muscles, then the legs will be built differently between two individuals with different DNA recipes. The different DNA recipes built a cheetah with strong fast legs, and a cheetah with slower weaker legs. Mutations can also occur to the parts of the DNA recipe which govern how and when a particular part of the recipe (a specific gene, which encodes a specific protein) is used and for how long. We can see dramatic difference in individuals just by using the same ingredients in the recipe for different lengths and at different times.

So as we can see, variation among individuals arises purely as part of the physical processes which build life.

The next important part is the selection of which variety of individual will pass on their variation of the DNA recipe, and which will not. It is quite easy to understand. Those which have variations which make them better able to survive, or out compete other individuals, will have a better chance of producing offspring. (like in our cheetah example)

You can easily see how different environments would favor different variations and place different selection pressures on individuals. For example in a cold environment those with thicker fur will have less chance of dying from exposure, and therefore a greater chance of surviving and reproducing. Or in a desert those who can store energy more efficiently will have less chance of dying of thirst or starvation. Selection is not random, and is in fact quite predictable .
So we could say: Variation is random, selection is non random.

So to get to the misconception of evolution having a goal; given what we know about how the process works, we can see that there is no goal for evolution or no end point that a species is trying to get to. Evolution happens simply because environments select for those traits in individuals that are going to more successful than those that are not in the current environment. A species group living 60 million years ago did not have a goal to try and evolve to become like a modern organism living now. Any single living thing is just trying to make a living at whatever time it is alive. It is the varying success of traits that will drive a change over time, not any type of goal or desire to change.

Evolution is not a march of progress in a defined direction, it is simply a natural response to varying environmental pressures placed on living organisms which replicate themselves.
So when we find a fossil of an extinct animal which is vastly different to a modern animal and evidence suggests that the extinct animal was once an ancestor of a currently living animal. We should not view it as if the extinct animal and all its descendants had a goal in mind of trying to morph into the modern form we recognize around today. We should view it as all the millions of descendants had variations that were selected for in various environments because the variation allowed that particular ancestral individual to successfully mate, and pass on the successful variant. It is useful not to think of living organisms as species of distinct groups of animals, but as collections of traits (or genes). Traits that were able to be passed down in varying environments because some traits suit some environments better than others.

Edited to add: Technically, there's really no such thing as "species," that's just how we categorize animals with similarities.

Imagine a color spectrum. At what point does red become orange? It's an arbitrary distinction made for convenience. All organisms evolve smoothly, there's no point at which one becomes another, just like you can never show the "transitional" point between red and orange.

This is why the creationist's hunt for a transitional species is a red herring. Either nothing is a transitional species, or everything is a transitional species. When scientists use that term, they're talking about filing in massive gaps of morphology in the fossil record. But if you had a sample of every animal that ever existed it would look like an extended version of a color spectrum. Imagine twenty feet of colors between aqua and blue-green.

http://www.vtutorials.com/curefaith/micro-vs-macroevolution.html

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The Out Campaign: Scarlet Letter of Atheism